Table 3 Significance of factors in describing the variation in bacterial communities between samples. Values highlighted in bold have a significant p-value
Factor (PERMANOVA ASV level) | Df | SumsOfSqs | MeanSqs | F.Model | R2 | Pr(> F) |
|---|---|---|---|---|---|---|
3D9-141 treatment (mock, low, moderate) | 2 | 1507.641 | 753.820 | 1.593 | 0.068 | 0.004 |
Soil type (LS/LS + GS) | 1 | 2138.834 | 2138.834 | 4.519 | 0.097 | 0.001 |
Treatment x soil | 2 | 971.754 | 485.877 | 1.027 | 0.044 | 0.394 |
Residuals | 37 | 17,511.574 | 473.286 | NA | 0.791 | NA |
Total | 42 | 22,129.803 | NA | NA | 1 | NA |
Factor (PERMANOVA genus level) | Df | SumsOfSqs | MeanSqs | F.Model | R2 | Pr(> F) |
3D9-141 treatment (mock, low, moderate) | 2 | 372.982 | 186.491 | 1.363 | 0.062 | 0.075 |
Soil type (LS/LS + GS) | 1 | 368.900 | 368.900 | 2.695 | 0.061 | 0.002 |
Treatment x soil | 2 | 245.005 | 122.503 | 0.895 | 0.040 | 0.648 |
Residuals | 37 | 5064.163 | 136.869 | NA | 0.837 | NA |
Total | 42 | 6051.050 | NA | NA | 1 | NA |
Factor (PERMANOVA order level) | Df | SumsOfSqs | MeanSqs | F.Model | R2 | Pr(> F) |
3D9-141 treatment (mock, low, moderate) | 2 | 265.792 | 132.896 | 1.771 | 0.078 | 0.008 |
Soil type (LS/LS + GS) | 1 | 224.703 | 224.703 | 2.995 | 0.066 | 0.001 |
Treatment x soil | 2 | 128.486 | 64.243 | 0.856 | 0.038 | 0.683 |
Residuals | 37 | 2775.851 | 75.023 | NA | 0.818 | NA |
Total | 42 | 3394.831 | NA | NA | 1 | NA |