Fig. 6

Phage-mediated dissemination of ARGs and VGs. a The Sankey plot illustrates the enriched links between in situ hosts and phages, including prophages and phage-plasmids (P-Ps). ARGs and/or VGs carried by phages are highlighted in orange and green text, respectively (right column). The only shared ARG between the in situ host and its linked phage is highlighted (left column). b A schematic depicting the insertion of ARGs by one prophage (top panel) and two putative P-Ps (bottom two panels) into their respective host genomes. c A maximum-likelihood phylogenetic tree of P-P S11C3896 from this study, alongside 15 phages from the NCBI Virus database. The branch representing this P-P is shown in red, with the colored stars indicating the hosts of these 15 phages. Black circles on the trees represent bootstrap values > 50%. d A maximum-likelihood phylogenetic tree of the rMAG FMD_015_bin.10 from this study and 1765 non-redundant complete strains of the genus Pseudomonas from the NCBI GenBank database. The branch representing this rMAG is shown in red. Black circles on the tree indicate bootstrap values > 50%