Skip to main content

Table 3 Results of inhibition assays with porcine isolates obtained from tonsil microbiota. Shown are strains (ID code) with inhibitory activity against at least one of the target bacteria tested

From: Culturomics of the pig tonsil microbiome identifies new species and an untapped source of novel antimicrobials

  

Inhibition assays

ID

16S ID

SS J28

SS S10

SS P1/7

SP1 DSM 23759

SP2 DSM 20725

SP3 DSM 29126

SA 6538P

EC L4242

PA DSM 10153

MP DSM 22804

3QC2CO

Aerococcus urinaeequi

-

-

-

-

-

-

 + 

-

-

-

4QC2CO

Aerococcus urinaeequi

-

-

-

-

-

-

 + 

-

-

-

7QC2CO

Aerococcus urinaeequi

-

-

-

-

-

-

 + 

-

-

-

15QC2O2

Aerococcus urinaeequi

-

-

-

-

-

-

 + 

-

-

-

4QC3CO

Aerococcus viridans

-

-

-

-

-

-

 + 

-

-

-

90QC2O2

Aerococcus viridans

-

-

-

-

-

-

 + + 

 + 

-

-

76QC2CO

Corynebacterium sp. (WGS)

 + + 

-

 + + 

 + + 

-

 + + 

 + 

-

-

-

20QC2O2

Corynebacterium sp. (WGS)

-

-

-

-

-

-

-

-

 ± 

 ± 

7QC3AN

Enterococcus faecalis

-

-

-

 ± 

-

 + 

-

-

-

-

79QC2CO

Escherichia coli

-

-

-

-

-

-

-

 + + 

-

-

85QC2CO

Escherichia coli

-

-

-

-

-

-

-

 + + 

-

-

97QC2O2

Escherichia coli

-

-

-

-

-

-

-

 + + 

-

-

21QC4O2

Escherichia coli

-

-

-

-

-

-

-

 + 

-

-

22QC4O2

Escherichia coli

-

-

-

-

-

-

-

 + 

-

-

1QC2AN

Escherichia coli

-

-

-

-

-

-

-

 + 

-

-

2QC2AN

Escherichia coli

-

-

-

-

-

-

-

 + 

-

-

4QC2AN

Escherichia coli

-

-

-

-

-

-

-

 + 

-

-

16QC3AN

Escherichia coli

-

-

-

-

-

-

-

 + 

-

-

41RC1

Lactobacillus salivarius

 ± 

-

-

-

-

-

-

-

-

-

172RC1

Lactobacillus salivarius

-

-

-

-

 + 

-

-

-

-

-

1292RC1

Neisseria dentiae (WGS)

-

-

-

 ± 

-

-

-

-

-

-

105QC2O2

Pediococcus pentosaceus (WGS)

-

-

-

-

-

-

-

-

-

 + 

111QC2O2

Pediococcus pentosaceus (WGS)

-

-

-

-

-

-

-

-

-

 + 

138RC1

Pelistega suis (WGS)

-

 ± 

-

-

-

-

-

-

-

-

95QC2O2

Serratia rubidaea

-

-

-

-

-

-

-

 + 

-

-

99QC2O2

Shigella flexneri

-

-

-

-

-

-

-

 + 

-

-

16QC3CO

Shigella sonnei

-

-

-

-

-

-

-

 + 

-

-

21QC3CO

Shigella sonnei

-

-

-

-

-

-

-

 + 

-

-

1252RC1

Staphylococcus aureus

 ± 

-

 + 

-

-

 + 

-

-

-

-

128RC1

Staphylococcus aureus

 + 

-

 + 

 ± 

-

-

-

-

-

-

129RC1

Staphylococcus aureus

 + 

-

 + 

 ± 

-

-

-

-

-

-

131RC1

Staphylococcus aureus (WGS)

 + 

-

 + 

 ± 

-

-

-

-

-

-

133RC1

Staphylococcus aureus (WGS)

 + 

-

 + 

 ± 

-

-

-

-

-

-

137RC1

Staphylococcus aureus (WGS)

 + 

-

 + 

 ± 

-

 + 

-

-

-

-

63QC2O2

Staphylococcus borealis (WGS)

-

-

-

-

-

-

-

-

-

 + 

32QC2O2

Staphylococcus gallinarum

-

-

-

-

-

-

-

-

-

 + 

140RC1

Staphylococcus hyicus

-

 ± 

-

-

-

-

-

-

-

-

26QC3O2

Staphylococcus microti

-

-

-

 ± 

-

-

-

-

-

-

41QC2CO

Staphylococcus sciuri

 ± 

-

-

-

-

-

-

-

-

-

8QC2O2

Staphylococcus sciuri (WGS)

-

-

-

-

-

-

-

-

 + 

 + 

83QC2O2

Staphylococcus xylosus

 ± 

-

-

-

-

 + 

-

-

-

-

12QC3O2

Streptococcus acidominimus

 ± 

-

-

 ± 

-

-

-

-

-

-

8RC1

Streptococcus gallolyticus

-

-

-

-

 + 

-

-

-

-

-

9RC1

Streptococcus gallolyticus

-

-

-

-

 + 

 ± 

-

-

-

-

74RC1

Streptococcus gallolyticus

-

-

-

-

 + 

 + 

-

-

-

-

99RC1

Streptococcus gallolyticus

-

-

-

-

 + 

-

-

-

-

-

150RC1

Streptococcus gallolyticus

-

-

-

-

 + 

-

-

-

-

-

171RC1

Streptococcus gallolyticus

-

-

-

-

 + 

-

-

-

-

-

13QC3AN

Streptococcus gallolyticus

 + 

 + 

 + 

-

 + 

 ± 

-

-

-

-

75RC1

Streptococcus gallolyticus

-

-

-

-

 + 

 + 

-

-

-

-

782RC1

Streptococcus gallolyticus

-

-

-

-

 + 

 + 

-

-

-

-

143RC1

Streptococcus gallolyticus

-

-

-

-

 + 

-

-

-

-

-

149RC1

Streptococcus gallolyticus

-

-

-

-

 + 

-

-

-

-

-

205RC1

Streptococcus gallolyticus

-

-

-

-

 + 

-

-

-

-

-

151RC1

Streptococcus gallolyticus (WGS)

-

-

-

-

 + 

-

-

-

-

-

12QC3AN

Streptococcus hyointestinalis

 + 

 + 

 + 

-

 + 

-

-

-

-

-

56RC1

Streptococcus macedonicus

-

-

-

-

 + 

-

-

-

-

-

40QC2CO

Streptococcus parasanguinis

 ± 

-

-

-

-

-

-

-

-

-

5QC2AN

Streptococcus porcinus

 + 

-

 + 

 ± 

-

 ± 

-

-

-

-

33QC3O2

Streptococcus porcorum

-

-

-

-

-

-

-

 ± 

-

-

  1. Inhibition zones were determined after overnight incubation. WGS whole genome sequence available. −Absence of inhibitory activity, ±inhibition zone of 2-mm diameter (weak), +inhibition zone between 3- and 5-mm diameter (weak), ++inhibition zone between 5- and 8-mm diameter. Streptococcus suis (SS), Streptococcus porci (SP1), Streptococcus porcinus (SP2), Streptococcus parasuis (SP3), Escherichia coli (EC), Pasteurella aerogenes (PA), Moraxella pluranimalium (MP)
Back to article page

Microbiome

ISSN: 2049-2618

Contact us