Fig. 3

Predicted versus observed distribution of ASVs across the spatially structured phyllosphere microbiomes within each site. A Bar plots showing the proportion of ASVs predicted (left) versus the proportion of ASVs that were observed (right) for each microbiome occurrence (N). Within these bar plots, colour indicates the predicted (left) versus observed (right) proportion of preferential host occupancy: mānuka (yellow), non-mānuka (black), and no preference (grey). B Bar plots showing the proportion of ASVs predicted (left) versus the proportion of ASVs that were observed for each microbiome occurrence (N) within mānuka (middle) and non-mānuka (right) microbiome host groups. All proportions are averaged per site. C Upset plot demonstrating the total number of shared and unique ASVs across each possible host species microbiome combination. Yellow represents host species combinations that include mānuka