Fig. 3

HIV exposure has a modestimpact on the enteric DNA virome in neonates at week 4 of life. A Viral alpha diversity in stool. B PCoA of enteric virome constructed by Bray–Curtis distance. C Relative abundance of enteric virome at the family level. D Differentially abundant gut viruses between nHEU and nHU by DESeq2 and corncob. E–H Predicted hosts of differentially abundant phages in the guts of nHEU and nHU. I Total number of lytic phages between nHEU and nHU by VIBRANT. J Total number of lysogenic phages between nHEU and nHU by VIBRANT analysis. Comparisons with p values < 0.05 are significant