Table 3 Metadata and metrics reported by the MAGqual pipeline in CSV format
From: MAGqual: a stand-alone pipeline to assess the quality of metagenome-assembled genomes
Metric | Reported |
|---|---|
Assembly quality | High-quality draft, near complete, medium-quality draft, low-quality draft, failed |
Completeness score | Percentage (%) |
Contamination score | Percentage (%) |
Completeness software | CheckM (version) |
16S rRNA genes recovered | Yes/no |
16S rRNA software | Bakta (version & database version) |
tRNA extracted | No./20 |
tRNA software | Bakta (version & database version) |
Completeness approach | Marker gene |
Assembly statistics | - |
 Size | No. of bp |
 N50 | No. of bp |
 Maximum contig length | No. of bp |
 Number of contigs | No |