Table 2 Bacterial species dominating the S. lugdunensis-associated CST3/5- and CST7-type microbiomes. Species that occur in all microbiomes of the indicated CST type are listed by decreasing median relative abundances (%) of species-specific metagenome reads. A threshold of 0.06% relative abundance was applied to the co-occurrence analysis with MEGAN6
CST3/5 | Median relative abundance (%) | CST7 | Median relative abundance (%) |
|---|---|---|---|
Staphylococcus epidermidis | 46.74 | Dolosigranulum pigrum | 89.69 |
Corynebacterium accolens | 23.12 | Corynebacterium propinquum | 0.88 |
Staphylococcus aureus | 2.09 | Staphylococcus epidermidis | 0.28 |
Corynebacterium tuberculostearicum | 1.96 | Streptococcus pneumoniae | 0.62 |
Cutibacterium acnes | 0.92 | Corynebacterium pseudodiphtheriticum | 0.84 |
Corynebacterium diphteriae | 0.87 | Staphylococcus aureus | 0.31 |
Corynebacterium striatum | 0.78 | Mycobacterium sp. | 0.11 |
Corynebacterium aurimucosum | 0.51 | Cutibacterium acnes | 0.13 |
Staphylococcus capitis | 0.33 | Alloiococcus otitis | 0.15 |
Corynebacterium efficiens | 0.32 | Alkalibacterium gilvum | 0.13 |
Streptococcus pneumoniae | 0.28 | ||
Staphylococcus lugdunensis | 0.27 | ||
Corynebacterium simulans | 0.18 |