Fig. 5

Log-fold change (logFC, x-axes) of ARG features A each treatment group (minimal, moderate, and intensive) comparing sequential sampling time points (i.e., positive logFC values indicate higher abundance in the later time point compared to the earlier time point) and B between treatment groups (minimal, moderate, and intensive) for each time point. Each dot represents the ARG feature in the group, and red dots represent ARG that are significantly different between comparison groups (i.e., logFC≥±1, BH adjusted P< 0.05)