Fig. 5

FBA visualization of the uptake/secretion of metabolites using iPATH. Positive uptake from the extracellular compartment is highlighted in blue. Negative uptake from the extracellular compartment is highlighted in red. The dot size is proportional to the absolute value of the rate of uptake/secretion. The community metabolic model was generated by merging 9 separate metabolic models (with MAG completeness > 80%). The highest secretion rates were observed for H+ and CO2, most likely because of their role in oxidative phosphorylation, methane metabolism, energy metabolism, and urea cycling. Sulfate uptake was observed as part of the sulfur metabolism